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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">jsms</journal-id><journal-title-group><journal-title xml:lang="ru">Journal of Siberian Medical Sciences</journal-title><trans-title-group xml:lang="en"><trans-title>Journal of Siberian Medical Sciences</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2542-1174</issn><publisher><publisher-name>Federal state budgetary educational institution of higher education "Novosibirsk state medical university" of  Ministry of Health of the Russian Federation (FSBEI HE NSMU MOH Russia)</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.31549/2542-1174-2022-6-3-72-89</article-id><article-id custom-type="elpub" pub-id-type="custom">jsms-847</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНЫЕ ИССЛЕДОВАНИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>ORIGINAL RESEARCH</subject></subj-group></article-categories><title-group><article-title>Встречаемость мутаций и потери гетерозиготности в гене ТР53 в зависимости от генотипа rs1042522 при диффузной В-крупноклеточной лимфоме</article-title><trans-title-group xml:lang="en"><trans-title>The occurrence of ТР53  gene mutations and loss of heterozygosity in diﬀuse large B-cell lymphoma in the dependence of rs1042522 genotype</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7542-7285</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Воропаева</surname><given-names>Е. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Voropaeva</surname><given-names>E. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Воропаева Елена Николаевна – доктор медицинских наук, старший научный сотрудник лаборатории молекулярно-генетических исследований терапевтических заболеваний.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Elena N. Voropaeva – Dr. Sci. (Med.), Senior Researcher, Laboratory of Molecular Genetic Studies of Therapeutic Diseases, Research Institute of Therapy and Preventive Medicine, Branch of the Federal Research Center Institute of Cytology and Genetics.</p><p>Novosibirsk.</p></bio><email xlink:type="simple">vena81@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1301-5944</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чуркина</surname><given-names>М. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Churkina</surname><given-names>M. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Чуркина Мария Игоревна – аспирант кафедры терапии, гематологии и трансфузиологии.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Maria I. Churkina – Postgraduate Student, Department of Therapy, Hematology and Transfusiology, Novosibirsk State Medical Universty.</p><p>Novosibirsk.</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2211-5098</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Баширзаде</surname><given-names>К. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Bashirzade</surname><given-names>K. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Баширзаде Ксения Александровна – ординатор.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Ksenia A. Bashirzade – Resident, Novosibirsk State Medical   University.</p><p>Novosibirsk.</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1261-5470</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Поспелова</surname><given-names>Т. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Pospelova</surname><given-names>T. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Поспелова Татьяна Ивановна – доктор медицинских наук, профессор, заведующий кафедрой терапии, гематологии и трансфузиологии, проректор по научной работе.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Tatyana  I.  Pospelova  –  Dr.  Sci.  (Med.),  Professor, Head of the Department of Therapy, Hematology and Transfusiology, Vice-Rector for Research, Novosibirsk State Medical University.</p><p>Novosibirsk.</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7933-8394</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Агеева</surname><given-names>Т. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Ageeva</surname><given-names>Т. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Агеева Татьяна Августовна – доктор медицинских наук, профессор кафедры патологической анатомии.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Tatyana A. Ageeva – Dr. Sci. (Med.), Professor, Department of Pathological Anatomy, Novosibirsk State Medical  University.</p><p>Novosibirsk.</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7165-4496</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Максимов</surname><given-names>В. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Maksimov</surname><given-names>V. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Максимов   Владимир   Николаевич – доктор медицинских наук, профессор, заведующий лабораторией молекулярно-генетических исследований терапевтических заболеваний.</p><p>Новосибирск.</p></bio><bio xml:lang="en"><p>Vladimir N. Maksimov – Dr. Sci. (Med.), Professor, Head, Laboratory of Molecular Genetic Studies of Therapeutic Diseases, Research Institute of Therapy and Preventive Medicine, Branch of the Federal Research Center Institute of Cytology and Genetics.</p><p>Novosibirsk.</p></bio><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>НИИ терапии и профилактической медицины – филиал ФГБНУ «Федеральный исследовательский центр Институт цитологии и генетики СО РАН»</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Institute of Therapy and Preventive Medicine, Branch of the Federal Research Center Institute of Cytology and Genetics</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Новосибирский государственный медицинский университет Минздрава России</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Novosibirsk State Medical University</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2022</year></pub-date><pub-date pub-type="epub"><day>27</day><month>09</month><year>2022</year></pub-date><volume>0</volume><issue>3</issue><fpage>72</fpage><lpage>89</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Воропаева Е.Н., Чуркина М.И., Баширзаде К.А., Поспелова Т.И., Агеева Т.А., Максимов В.Н., 2022</copyright-statement><copyright-year>2022</copyright-year><copyright-holder xml:lang="ru">Воропаева Е.Н., Чуркина М.И., Баширзаде К.А., Поспелова Т.И., Агеева Т.А., Максимов В.Н.</copyright-holder><copyright-holder xml:lang="en">Voropaeva E.N., Churkina M.I., Bashirzade K.A., Pospelova T.I., Ageeva Т.A., Maksimov V.N.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://jsms.elpub.ru/jour/article/view/847">https://jsms.elpub.ru/jour/article/view/847</self-uri><abstract><sec><title>В в е д е н и е</title><p>В в е д е н и е .  Недавние исследования показали, что в опухолевых клетках различных типов злокачественных новообразований у носителей гетерозиготного варианта rs1042522 гена ТР53 большая часть точечных мутаций выявляется в Arg-аллеле, а потеря гетерозиготности (ПГ) приводит к утрате Pro-аллеля. Одновременно с этим описана связь Arg-аллеля данного полиморфизма со снижением эффективности терапии больных злокачественными новообразованиями. Ранее изучение rs1042522 на выборках пациентов с лимфомами проводилось только в здоровых тканях, в опухолевой ткани диффузной В-крупноклеточной лимфомы (ДВККЛ) исследования данного однонуклеотидного полиморфизма  не  выполнялись.  Учитывая склонность В-лимфоцитов к р53-опосредованному апоптозу, особый интерес представляет изучение генотипа rs1042522 в сочетании с соматическими аберрациями, такими как мутации или ПГ гена ТР53 в опухолевой ткани ДВККЛ.</p></sec><sec><title>Ц е л ь</title><p>Ц е л ь .   Описать частоту встречаемости соматических мутаций и ПГ в гене ТР53 в зависимости от генотипа rs1042522 в опухолевой ткани пациентов с ДВККЛ.</p><p>М а т е р и а л ы    и    м е т о д ы .   В исследование вошли 150 больных с подтвержденным (гистологически и иммуногистохимически) диагнозом ДВККЛ. Выделение нуклеиновых кислот выполняли по стандартной методике фенольно-хлороформным методом из блоков фиксированных формалином и залитых в парафин биоптатов лимфомы. Для анализа генотипа rs1042522 и определения утраты аллелей гена ТР53 применяли метод полимеразной цепной реакции с последующей обработкой эндонуклеазой рестрикции электрофорезом в полиакриламидном геле. Подтверждение случаев ПГ и идентификация точечных мутаций в анализируемом гене выполняли методом прямого автоматического капиллярного секвенирования.</p></sec><sec><title>Р е з у л ь т а т ы</title><p>Р е з у л ь т а т ы .  В группе исследования в 1/3 образцов уже на момент диагностики лимфомы имели место аберрации (ПГ и мутации) последовательности ТР53. Сочетания ПГ и мутантного статуса данного гена у больных с гетерозиготным Arg/Pro генотипом тестируемого полиморфизма в опухолевой ткани выявлено не было. Вместе с тем точечные мутации имели 20 из 73 (20/73) биоптатов лимфомы с генотипом Arg/Arg. В образцах опухоли с генотипами Pro/Pro или Arg/Pro точечные замены в ТР53 имели единичные образцы – 1/13 и 4/64 соответственно (p &lt; 0.001). Таким образом, было показано, что в образцах ДВККЛ с гомозиготным Arg/Arg генотипом отношение шансов сочетания ПГ с мутациями ТР53 в 5.4 раза (p &lt; 0.001) превышало значение для образцов с Pro/Pro или Arg/Pro генотипами (отношение шансов –  5.4, 95% доверительный интервал – 1.9; 15.4).</p></sec><sec><title>З а к л ю ч е н и е</title><p>З а к л ю ч е н и е .   С целью увеличения вероятности идентификации случаев сочетанного выявления ПГ и точечных аберраций в ТР53 в образцах с различными генотипами rs1042522 возможно расширение выборки анализируемых образцов лимфомы, а также применение более чувствительных методик идентификации нарушений в структуре изучаемого гена. Возможным направлением дальнейших исследований также может быть анализ клинической значимости сочетанного выявления гомозиготного Arg/Arg генотипа G/G анализируемого маркера и ПГ или/и соматических мутаций в гене ТР53 в опухолевой ткани пациентов с лимфомой.</p></sec></abstract><trans-abstract xml:lang="en"><sec><title>I n t r o d u c t i o n</title><p>I n t r o d u c t i o n .  Recent studies have shown that in tumor cells of various types of malignant neoplasms, in carriers of the heterozygous variant rs1042522 of the TP53 gene, most of the point mutations are detected in the G allele of the gene, while the C allele was lacking as a result of loss heterozygosity (LH). At the same time, the association of the G allele of the rs1042522 gene with a decrease in the eﬀectiveness of therapy in patients with malignant neoplasms was described. Previously, the study of rs1042522 on samples of patients with lymphomas was carried out only in healthy tissues; in the tumor tissue of diﬀuse large B-cell lymphoma (DLBCL), this single nucleotide polymorphism was not studied. Given the propensity of B-lymphocytes to p53-mediated apoptosis, the study of the rs1042522 genotype in combination with somatic aberrations, such as mutations or LH of the TP53 gene in the tumor tissue of DLBCL is of particular interest.</p></sec><sec><title>A i m</title><p>A i m .  To describe the frequency of occurrence of somatic mutations and LH in the TP53 gene depending on the rs1042522 genotype in the tumor tissue of patients with DLBCL.</p><p>M a t e r i a l s   a n d   m e t h o d s .  The study included 150 patients with a diagnosis of DLBCL confirmed histologically and immunohistochemically. DNA was isolated from paraﬃnized blocks of tumor lymph nodes and extranodal lesions by phenol-chloroform extraction using guanidine. Genotyping according to rs1042522 and detection of cases of loss of heterozygosity in the TР53 gene was carried out by PCR with the analysis of polymorphism of the lengths of restriction fragments. Confirmation of LH and the search for mutations in the TP53 gene were carried out by direct Sanger sequencing.</p></sec><sec><title>R e s u l t s</title><p>R e s u l t s .  In the study group, almost a third (28.6%) of patients with DLBCL at the stage of tumor diagnosis had genetic anomalies in the structure of the TР53 gene (LH and mutations). The combination of LH and the mutant status of this gene in patients with heterozygous Arg/Pro genotype of the tested polymorphism in the tumor tissue was not revealed. At the same time, it was noted that in a subgroup of 73 samples with a homozygous G/G genotype, mutations were detected in 20 cases (27.3%). In the subgroups of C/C homozygous and G/C heterozygous samples, the mutation was detected only in 1/13 (7.7%) and 4/64 (6.25%) cases, respectively. The significance of diﬀerences in the frequency of detection of mutations between G/G homozygous patients and other patients with DLBCL (genotypes C/C+G/C) was p &lt; 0.001, and the probability of detecting mutations in the TР53 gene in carriers of the G/G genotype was more than 5.4 times higher than that in carriers of other genotypes (odds ratio – 5.4, 95% confidence interval – 1.9; 15.4).</p></sec><sec><title>C o n c l u s i o n</title><p>C o n c l u s i o n .  In order to increase the probability of identifying of combined detection of LH and mutations in TP53 with diﬀerent rs1042522 genotypes, it is possible to increase the number of lymphoma samples, as well as the use of high-performance sequencing and methods for searching for allelic imbalance, which will allow registering the loss of heterozygosity in homozygous samples as well. A possible direction for further research may also be the analysis of the clinical significance of the combined detection of the homozygous genotype G/G of the marker and LH or/and somatic mutations in the TP53 gene in the tumor tissue of patients with lymphoma.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>ген ТР53</kwd><kwd>мутации</kwd><kwd>генетический ландшафт</kwd><kwd>однонуклеотидный полиморфизм</kwd><kwd>утрата гетерозиготности</kwd><kwd>неходжкинская лимфома</kwd></kwd-group><kwd-group xml:lang="en"><kwd>ТР53 gene</kwd><kwd>mutations</kwd><kwd>genetic profile</kwd><kwd>single nucleotide polymorphism</kwd><kwd>loss of heterozygosity</kwd><kwd>diﬀuse B-large cell lymphoma</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Работа выполнена в рамках бюджетной темы по Государственному заданию № АААА-А17-117112850280-2.</funding-statement><funding-statement xml:lang="en">The work was carried out within the framework of the budget topic under the State Assignment No. АААА-А17-117112850280-2.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Kwai H.Y., Hyewon L., Cheolwon S. 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